PDB Entry (5e0g)
PDB ID: 5e0g Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27235842 DOI: 10.1016/j.ejmech.2016.04.013
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   benzyl N-[(8S,11S,14S)-8-formyl-11-(2-methylpropyl)-5,10,13-trioxo-1,4,9,12,17,18-hexaazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate
Canonical SMILES:   c12cn(nn1)CCNC(=O)CC[C@@H](C=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C2)NC(=O)OCc3ccccc3
Standard InChI:   InChI=1S/C26H35N7O6/c1-17(2)12-21-24(36)28-19(15-34)8-9-23(35)27-10-11-33-14-20(31-32-33)13-22(25(37)29-21)30-26(38)39-16-18-6-4-3-5-7-18/h3-7,14-15,17,19,21-22H,8-13,16H2,1-2H3,(H,27,35)(H,28,36)(H,29,37)(H,30,38)/t19-,21-,22-/m0/s1
HET Code:   5LG PubChem:   127043300
DrugBank:   - ChEMBL:   CHEMBL3828550
Molecular Formula:   C26H35N7O6 Mol. Weight:   541.2649 logP:   0.2402
HBD:   4 HBA:   9
#Rotatable Bonds:   6 TPSA:   173.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 11.38 14.16 Aldehyde
Binding Affinity
Database Name Value
PDBBind IC50 : 1600 nM