PDB Entry (5E51)
PDB ID: 5E51 Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27820797 DOI: 10.1038/nchembio.2237
Protein
Protein Name: L,D-transpeptidase 1
Uniprot ID/ACC: O53638 (LDT1_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: ldtA Gene ID: 886900
Protein Class: TRANSFERASE
Ligand
Ligand Name:   Faropenem
Canonical SMILES:   C[C@@H](O)[C@@H]1[C@H]2SC([C@H]3CCCO3)=C(N2C1=O)C(O)=O
Standard InChI:   InChI=1S/C12H15NO5S/c1-5(14)7-10(15)13-8(12(16)17)9(19-11(7)13)6-3-2-4-18-6/h5-7,11,14H,2-4H2,1H3,(H,16,17)/t5-,6-,7+,11-/m1/s1
HET Code:   5KO PubChem:   65894
DrugBank:   DB12190 ChEMBL:   CHEMBL556262
Molecular Formula:   C12H15NO5S Mol. Weight:   285.0671 logP:   0.3737
HBD:   2 HBA:   5
#Rotatable Bonds:   3 TPSA:   87.07
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition CYS 226 A 8.16 12.16 Beta-Lactam
Binding Affinity
-