PDB Entry (4dwq) |
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PDB ID: 4dwq | Resolution: 2.25 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 22949672 | DOI: 10.1073/pnas.1213795109 | |
Protein |
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Protein Name: RNA-splicing ligase RtcB | |
Uniprot ID/ACC: O59245 (RTCB_PYRHO) | Organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) |
Gene Symbol: rtcB | Gene ID: - |
Protein Class: LIGASE |
Ligand |
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Ligand Name: GUANOSINE-5'-MONOPHOSPHATE | ||
Canonical SMILES: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O | ||
Standard InChI: InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1 | ||
HET Code: 5GP | PubChem: 135398631 | |
DrugBank: DB01972 | ChEMBL: CHEMBL283807 | |
Molecular Formula: C10H14N5O8P | Mol. Weight: 363.058 | logP: -2.5697 |
HBD: 6 | HBA: 10 | |
#Rotatable Bonds: 4 | TPSA: 206.04 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Phosphorylation | HIS 404 | A | 24.42 | 0.97 | Phosphate |
Binding Affinity |
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