PDB Entry (5dp3)
PDB ID: 5dp3 Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26987809 DOI: 10.1016/j.bbagen.2016.03.017
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: A9XG43 (A9XG43_HE71) Organism: Human enterovirus 71 (EV71) (EV-71)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   ethyl (4S)-5-[(3S)-2-oxopyrrolidin-3-yl]-4-[(3-phenylpropanoyl)amino]pent-2-enoate
Canonical SMILES:   O=C1NCC[C@H]1C[C@@H](/C=C/C(=O)OCC)NC(=O)CCc2ccccc2
Standard InChI:   InChI=1S/C20H26N2O4/c1-2-26-19(24)11-9-17(14-16-12-13-21-20(16)25)22-18(23)10-8-15-6-4-3-5-7-15/h3-7,9,11,16-17H,2,8,10,12-14H2,1H3,(H,21,25)(H,22,23)/b11-9+/t16-,17+/m0/s1
HET Code:   5GH PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C20H26N2O4 Mol. Weight:   358.18927 logP:   1.7495
HBD:   2 HBA:   4
#Rotatable Bonds:   9 TPSA:   84.5
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 147 A 19.73 12.87 Vinyl Carbonyl
Binding Affinity
-