PDB Entry (5dp9)
PDB ID: 5dp9 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26987809 DOI: 10.1016/j.bbagen.2016.03.017
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: A9XG43 (A9XG43_HE71) Organism: Human enterovirus 71 (EV71) (EV-71)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Canonical SMILES:   O=C1NCC[C@H]1C[C@@H](/C=C/C(=O)OCC)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCC3CCC3
Standard InChI:   InChI=1S/C27H36N4O6/c1-2-37-23(32)12-11-21(16-20-13-14-28-24(20)33)30-25(34)22(15-18-7-4-3-5-8-18)31-27(36)26(35)29-17-19-9-6-10-19/h3-5,7-8,11-12,19-22H,2,6,9-10,13-17H2,1H3,(H,28,33)(H,29,35)(H,30,34)(H,31,36)/b12-11+/t20-,21+,22-/m0/s1
HET Code:   5EX PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C27H36N4O6 Mol. Weight:   512.2635 logP:   0.7605
HBD:   4 HBA:   6
#Rotatable Bonds:   12 TPSA:   142.7
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 147 A 20.21 14.88 Vinyl Carbonyl
Binding Affinity
Database Name Value
PDBBind IC50 : 840 nM