PDB Entry (5dp8) |
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PDB ID: 5dp8 | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26987809 | DOI: 10.1016/j.bbagen.2016.03.017 | |
Protein |
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Protein Name: Genome polyprotein | |
Uniprot ID/ACC: A9XG43 (A9XG43_HE71) | Organism: Human enterovirus 71 (EV71) (EV-71) |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ethyl (2Z,4S)-4-[(N-{[(2-cyclopropylethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate | ||
Canonical SMILES: O=C1NCC[C@H]1C[C@@H](/C=C/C(=O)OCC)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCCC3CC3 | ||
Standard InChI: InChI=1S/C27H36N4O6/c1-2-37-23(32)11-10-21(17-20-13-15-28-24(20)33)30-25(34)22(16-19-6-4-3-5-7-19)31-27(36)26(35)29-14-12-18-8-9-18/h3-7,10-11,18,20-22H,2,8-9,12-17H2,1H3,(H,28,33)(H,29,35)(H,30,34)(H,31,36)/b11-10+/t20-,21+,22-/m0/s1 | ||
HET Code: 5ED | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C27H36N4O6 | Mol. Weight: 512.2635 | logP: 0.7605 |
HBD: 4 | HBA: 6 | |
#Rotatable Bonds: 13 | TPSA: 142.7 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 147 | A | 19.99 | 14.8 | Vinyl Carbonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 440 nM |