PDB Entry (5dp5)
PDB ID: 5dp5 Resolution: 2.03 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26987809 DOI: 10.1016/j.bbagen.2016.03.017
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: A9XG43 (A9XG43_HE71) Organism: Human enterovirus 71 (EV71) (EV-71)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Canonical SMILES:   O=C1NCC[C@H]1C[C@@H](/C=C/C(=O)OCC)NC(=O)[C@@H](CC(=O)[C@@H](N)C(C)C)Cc2ccc(F)cc2
Standard InChI:   InChI=1S/C26H36FN3O5/c1-4-35-23(32)10-9-21(14-18-11-12-29-25(18)33)30-26(34)19(15-22(31)24(28)16(2)3)13-17-5-7-20(27)8-6-17/h5-10,16,18-19,21,24H,4,11-15,28H2,1-3H3,(H,29,33)(H,30,34)/b10-9+/t18-,19+,21+,24-/m0/s1
HET Code:   5E9 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C26H36FN3O5 Mol. Weight:   489.2639 logP:   2.0572
HBD:   3 HBA:   6
#Rotatable Bonds:   13 TPSA:   127.59
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 147 A 20.62 15.08 Vinyl Carbonyl
Binding Affinity
Database Name Value
PDBBind IC50 : 18700 nM