PDB Entry (5df8)
PDB ID: 5df8 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26823174 DOI: 10.1002/1873-3468.12054
Protein
Protein Name: Peptidoglycan D,D-transpeptidase FtsI
Uniprot ID/ACC: Q51504 (Q51504_PSEAI) Organism: Pseudomonas aeruginosa
Gene Symbol: pbpB Gene ID: 881247
Protein Class: TRANSFERASE
Ligand
Ligand Name:   CEFOPERAZONE
Canonical SMILES:   CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H]2[C@H]3SCC(CSc4nnnn4C)=C(N3C2=O)C(O)=O)c2ccc(O)cc2)C(=O)C1=O
Standard InChI:   InChI=1S/C25H27N9O8S2/c1-3-32-8-9-33(21(39)20(32)38)24(42)27-15(12-4-6-14(35)7-5-12)18(36)26-16-19(37)34-17(23(40)41)13(10-43-22(16)34)11-44-25-28-29-30-31(25)2/h4-7,15-16,22,35H,3,8-11H2,1-2H3,(H,26,36)(H,27,42)(H,40,41)/t15-,16-,22-/m1/s1
HET Code:   59F PubChem:   44187
DrugBank:   DB01329 ChEMBL:   CHEMBL507674
Molecular Formula:   C25H27N9O8S2 Mol. Weight:   645.1424 logP:   -1.112
HBD:   4 HBA:   13
#Rotatable Bonds:   9 TPSA:   220.26
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 294 A 11.57 - Beta-Lactam
Binding Affinity
-