PDB Entry (2dc8) |
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PDB ID: 2dc8 | Resolution: 1.94 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Cathepsin B | |
Uniprot ID/ACC: P07688 (CATB_BOVIN) | Organism: Bos taurus (Bovine) |
Gene Symbol: CTSB | Gene ID: 281105 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: B-CA059 | ||
Canonical SMILES: CCOC(=O)[C@H]1O[C@@H]1C(=O)N[C@@H]([C@@H](C)CC)C(O)=O | ||
Standard InChI: InChI=1S/C12H19NO6/c1-4-6(3)7(11(15)16)13-10(14)8-9(19-8)12(17)18-5-2/h6-9H,4-5H2,1-3H3,(H,13,14)(H,15,16)/t6-,7-,8-,9-/m0/s1 | ||
HET Code: 59A | PubChem: 23647357 | |
DrugBank: DB07160 | ChEMBL: CHEMBL1230379 | |
Molecular Formula: C12H19NO6 | Mol. Weight: 273.12125 | logP: -0.0676 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 7 | TPSA: 105.23 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | CYS 29 | A | 16.32 | 15.23 | Epoxide |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 24000 nM |