PDB Entry (5d11) |
||
| ||
PDB ID: 5d11 | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26275028 | DOI: 10.1021/acs.jmedchem.5b01082 | |
Protein |
|
Protein Name: Proto-oncogene tyrosine-protein kinase Src | |
Uniprot ID/ACC: P00523 (SRC_CHICK) | Organism: Gallus gallus (Chicken) |
Gene Symbol: SRC | Gene ID: 396442 |
Protein Class: TRANSFERASE |
Ligand |
||
Ligand Name: N-[3-({4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}oxy)phenyl]prop-2-enamide | ||
Canonical SMILES: CN1CCN(CC1)c1cc(Nc2cc(C)[nH]n2)nc(Oc2cccc(NC(=O)C=C)c2)n1 | ||
Standard InChI: InChI=1S/C22H26N8O2/c1-4-21(31)23-16-6-5-7-17(13-16)32-22-25-18(24-19-12-15(2)27-28-19)14-20(26-22)30-10-8-29(3)9-11-30/h4-7,12-14H,1,8-11H2,2-3H3,(H,23,31)(H2,24,25,26,27,28) | ||
HET Code: 56G | PubChem: 122186141 | |
DrugBank: - | ChEMBL: CHEMBL3604921 | |
Molecular Formula: C22H26N8O2 | Mol. Weight: 434.21786 | logP: 2.92032 |
HBD: 3 | HBA: 8 | |
#Rotatable Bonds: 7 | TPSA: 111.3 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 345 | A | 34.76 | 13.02 | Vinyl Sulfonyl |
Binding Affinity |
|
Database Name | Value |
PDBBind | IC50 : 28 nM |
BindingDB | IC50 : 28 nM , IC50 : 170 nM |