PDB Entry (5cyi) |
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PDB ID: 5cyi | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26320860 | DOI: 10.1016/j.chembiol.2015.07.018 | |
Protein |
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Protein Name: Cyclin-dependent kinase 2 | |
Uniprot ID/ACC: P24941 (CDK2_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CDK2 | Gene ID: 1017 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 6-(cyclohexylmethoxy)-N-[4-(ethenesulfonyl)phenyl]-9H-purin-2-amine | ||
Canonical SMILES: C=CS(=O)(=O)c1ccc(cc1)Nc(n2)nc(c(c23)nc[nH]3)OCC4CCCCC4 | ||
Standard InChI: InChI=1S/C20H23N5O3S/c1-2-29(26,27)16-10-8-15(9-11-16)23-20-24-18-17(21-13-22-18)19(25-20)28-12-14-6-4-3-5-7-14/h2,8-11,13-14H,1,3-7,12H2,(H2,21,22,23,24,25) | ||
HET Code: 55S | PubChem: 118704754 | |
DrugBank: - | ChEMBL: CHEMBL4518287 | |
Molecular Formula: C20H23N5O3S | Mol. Weight: 413.15216 | logP: 3.9728 |
HBD: 2 | HBA: 7 | |
#Rotatable Bonds: 7 | TPSA: 109.86 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | LYS 89 | A | 125.29 | 10.08 | Vinyl Sulfonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 1310 nM |