PDB Entry (5cls) |
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PDB ID: 5cls | Resolution: 1.75 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26686773 | DOI: 10.1021/acschembio.5b00755 | |
Protein |
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Protein Name: Methionine aminopeptidase 2 | |
Uniprot ID/ACC: P50579 (MAP2_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: METAP2 | Gene ID: 10988 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (4R,7R)-3-[(4-methoxyphenyl)methyl]-3,5,6,7-tetrahydrospiro[1,2,3-benzotriazole-4,2'-oxiran]-7-yl N-(propan-2-yl)carbamate | ||
Canonical SMILES: COc1ccc(cc1)Cn2nnc(c2[C@]34CO3)[C@@H](CC4)OC(=O)NC(C)C | ||
Standard InChI: InChI=1S/C19H24N4O4/c1-12(2)20-18(24)27-15-8-9-19(11-26-19)17-16(15)21-22-23(17)10-13-4-6-14(25-3)7-5-13/h4-7,12,15H,8-11H2,1-3H3,(H,20,24)/t15-,19+/m1/s1 | ||
HET Code: 52T | PubChem: 90082686 | |
DrugBank: - | ChEMBL: CHEMBL4555571 | |
Molecular Formula: C19H24N4O4 | Mol. Weight: 372.17975 | logP: 2.53 |
HBD: 1 | HBA: 7 | |
#Rotatable Bonds: 5 | TPSA: 90.8 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | HIS 231 | A | 56.6 | 1.18 | Epoxide |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 220 nM |