PDB Entry (5cls)
PDB ID: 5cls Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26686773 DOI: 10.1021/acschembio.5b00755
Protein
Protein Name: Methionine aminopeptidase 2
Uniprot ID/ACC: P50579 (MAP2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: METAP2 Gene ID: 10988
Protein Class: HYDROLASE
Ligand
Ligand Name:   (4R,7R)-3-[(4-methoxyphenyl)methyl]-3,5,6,7-tetrahydrospiro[1,2,3-benzotriazole-4,2'-oxiran]-7-yl N-(propan-2-yl)carbamate
Canonical SMILES:   COc1ccc(cc1)Cn2nnc(c2[C@]34CO3)[C@@H](CC4)OC(=O)NC(C)C
Standard InChI:   InChI=1S/C19H24N4O4/c1-12(2)20-18(24)27-15-8-9-19(11-26-19)17-16(15)21-22-23(17)10-13-4-6-14(25-3)7-5-13/h4-7,12,15H,8-11H2,1-3H3,(H,20,24)/t15-,19+/m1/s1
HET Code:   52T PubChem:   90082686
DrugBank:   - ChEMBL:   CHEMBL4555571
Molecular Formula:   C19H24N4O4 Mol. Weight:   372.17975 logP:   2.53
HBD:   1 HBA:   7
#Rotatable Bonds:   5 TPSA:   90.8
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening HIS 231 A 56.6 1.18 Epoxide
Binding Affinity
Database Name Value
PDBBind IC50 : 220 nM