PDB Entry (1gjp) |
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PDB ID: 1gjp | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 11513881 | DOI: 10.1016/S0014-5793(01)02721-1 | |
Protein |
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Protein Name: Delta-aminolevulinic acid dehydratase | |
Uniprot ID/ACC: P05373 (HEM2_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: HEM2 | Gene ID: 852842 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 4-OXOSEBACIC ACID | ||
Canonical SMILES: OC(=O)CCCCCC(=O)CCC(O)=O | ||
Standard InChI: InChI=1S/C10H16O5/c11-8(6-7-10(14)15)4-2-1-3-5-9(12)13/h1-7H2,(H,12,13)(H,14,15) | ||
HET Code: 4OX | PubChem: 1755 | |
DrugBank: DB02260 | ChEMBL: CHEMBL1230315 | |
Molecular Formula: C10H16O5 | Mol. Weight: 216.09978 | logP: 1.4554 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 9 | TPSA: 91.67 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 263 | A | 17.1 | 4.73 | Ketone |
Binding Affinity |
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