PDB Entry (1gjp)
PDB ID: 1gjp Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11513881 DOI: 10.1016/S0014-5793(01)02721-1
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: P05373 (HEM2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: HEM2 Gene ID: 852842
Protein Class: LYASE
Ligand
Ligand Name:   4-OXOSEBACIC ACID
Canonical SMILES:   OC(=O)CCCCCC(=O)CCC(O)=O
Standard InChI:   InChI=1S/C10H16O5/c11-8(6-7-10(14)15)4-2-1-3-5-9(12)13/h1-7H2,(H,12,13)(H,14,15)
HET Code:   4OX PubChem:   1755
DrugBank:   DB02260 ChEMBL:   CHEMBL1230315
Molecular Formula:   C10H16O5 Mol. Weight:   216.09978 logP:   1.4554
HBD:   2 HBA:   3
#Rotatable Bonds:   9 TPSA:   91.67
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 263 A 17.1 4.73 Ketone
Binding Affinity
-