PDB Entry (4yv2) |
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PDB ID: 4yv2 | Resolution: 2.17 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26327378 | DOI: 10.1107/S1399004715013048 | |
Protein |
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Protein Name: Spermidine synthase, putative | |
Uniprot ID/ACC: Q4DA73 (Q4DA73_TRYCC) | Organism: Trypanosoma cruzi (strain CL Brener) |
Gene Symbol: Tc00.1047053510339.50 | Gene ID: 3542221 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 2‐phenyl‐Isothiazolinone | ||
Canonical SMILES: O=c1ccsn1-c2ccccc2 | ||
Standard InChI: InChI=1S/C9H7NOS/c11-9-6-7-12-10(9)8-4-2-1-3-5-8/h1-7H | ||
HET Code: 4K3 | PubChem: 11052198 | |
DrugBank: - | ChEMBL: CHEMBL99594 | |
Molecular Formula: C9H7NOS | Mol. Weight: 177.02484 | logP: 1.899 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 1 | TPSA: 22.0 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Ring Opening | CYS 239 | B | 23.46 | 99.99 | Isothiazolinone |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 51 nM |