PDB Entry (5tnd)
PDB ID: 5tnd Resolution: 1.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28392259 DOI: 10.1016/j.str.2017.03.002
Protein
Protein Name: Putative hydrolase
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) Organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Gene Symbol: PA14_26090 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (1R,2R)-1,2-Epoxycyclohexane
Canonical SMILES:   [C@H]12[C@H](O2)CCCC1
Standard InChI:   InChI=1S/C6H10O/c1-2-4-6-5(3-1)7-6/h5-6H,1-4H2/t5-,6-/m1/s1
HET Code:   40O PubChem:   11170921
DrugBank:   - ChEMBL:   -
Molecular Formula:   C6H10O Mol. Weight:   98.073166 logP:   1.3278
HBD:   0 HBA:   1
#Rotatable Bonds:   0 TPSA:   12.53
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening ASP 129 C 17.67 9.28 Epoxide
Binding Affinity
-