PDB Entry (4wyy)
PDB ID: 4wyy Resolution: 1.28 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27622821 DOI: 10.1021/acsinfecdis.5b00031
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: P24735 (AMPC_PSEAE) Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Gene Symbol: ampC Gene ID: 878149
Protein Class: HYDROLASE
Ligand
Ligand Name:   [(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid
Canonical SMILES:   Cc1c2[C@@H](CC(O)=O)OB(O)c2cc(Oc2cnccn2)c1C
Standard InChI:   InChI=1S/C15H15BN2O5/c1-8-9(2)15-10(16(21)23-12(15)6-14(19)20)5-11(8)22-13-7-17-3-4-18-13/h3-5,7,12,21H,6H2,1-2H3,(H,19,20)/t12-/m1/s1
HET Code:   3VT PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H15BN2O5 Mol. Weight:   314.1074 logP:   1.11924
HBD:   2 HBA:   6
#Rotatable Bonds:   4 TPSA:   101.77
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 90 A 12.87 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind IC50 : 1000 nM