PDB Entry (4qtf) |
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PDB ID: 4qtf | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: L,D-transpeptidase 2 | |
Uniprot ID/ACC: I6Y9J2 (LDT2_MYCTU) | Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Gene Symbol: ldtB | Gene ID: 888160 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: (5S,6R)-6-acetyl-3-({[(aminomethyl)amino]methyl}sulfanyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid | ||
Canonical SMILES: CC(=O)[C@H]1[C@@H]2CC(SCNCN)=C(N2C1=O)C(O)=O | ||
Standard InChI: InChI=1S/C11H15N3O4S/c1-5(15)8-6-2-7(19-4-13-3-12)9(11(17)18)14(6)10(8)16/h6,8,13H,2-4,12H2,1H3,(H,17,18)/t6-,8-/m0/s1 | ||
HET Code: 3V5 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H15N3O4S | Mol. Weight: 285.07834 | logP: -0.7012 |
HBD: 3 | HBA: 6 | |
#Rotatable Bonds: 6 | TPSA: 112.73 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | CYS 354 | A | 19.25 | 13.36 | Beta-Lactam |
Binding Affinity |
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