PDB Entry (4wsj) |
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PDB ID: 4wsj | Resolution: 1.64 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29142681 | DOI: 10.1039/c4sc03739a | |
Protein |
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Protein Name: Alpha-L-fucosidase | |
Uniprot ID/ACC: Q8A3I4 (Q8A3I4_BACTN) | Organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) |
Gene Symbol: BT_2970 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N-acetyl cyclophellitol aziridine | ||
Canonical SMILES: O=C(C)N1[C@@H]([C@@H]12)[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O | ||
Standard InChI: InChI=1S/C9H15NO4/c1-3-5-6(10(5)4(2)11)8(13)9(14)7(3)12/h3,5-9,12-14H,1-2H3/t3-,5-,6-,7-,8-,9-,10?/m1/s1 | ||
HET Code: 3U3 | PubChem: 132568610 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H15NO4 | Mol. Weight: 201.10011 | logP: -1.6819 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 0 | TPSA: 80.77 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Aziridine Opening | ASP 229 | D | 24.22 | 6.07 | Aziridine |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 46.8 nM |