PDB Entry (4x2p) |
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PDB ID: 4x2p | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25844917 | DOI: 10.1021/acs.biochem.5b00221 | |
Protein |
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Protein Name: Mandelate racemase | |
Uniprot ID/ACC: P11444 (MANR_PSEPU) | Organism: Pseudomonas putida (Arthrobacter siderocapsulatus) |
Gene Symbol: mdlA | Gene ID: 45526288 |
Protein Class: ISOMERASE |
Ligand |
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Ligand Name: 3-hydroxypyruvate | ||
Canonical SMILES: OCC(=O)C(O)=O | ||
Standard InChI: InChI=1S/C3H4O4/c4-1-2(5)3(6)7/h4H,1H2,(H,6,7) | ||
HET Code: 3PY | PubChem: 964 | |
DrugBank: DB02951 | ChEMBL: CHEMBL1230192 | |
Molecular Formula: C3H4O4 | Mol. Weight: 104.010956 | logP: -1.3676 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 74.6 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 166 | A | 38.6 | 8.3 | Ketone |
Binding Affinity |
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