PDB Entry (4x2p)
PDB ID: 4x2p Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25844917 DOI: 10.1021/acs.biochem.5b00221
Protein
Protein Name: Mandelate racemase
Uniprot ID/ACC: P11444 (MANR_PSEPU) Organism: Pseudomonas putida (Arthrobacter siderocapsulatus)
Gene Symbol: mdlA Gene ID: 45526288
Protein Class: ISOMERASE
Ligand
Ligand Name:   3-hydroxypyruvate
Canonical SMILES:   OCC(=O)C(O)=O
Standard InChI:   InChI=1S/C3H4O4/c4-1-2(5)3(6)7/h4H,1H2,(H,6,7)
HET Code:   3PY PubChem:   964
DrugBank:   DB02951 ChEMBL:   CHEMBL1230192
Molecular Formula:   C3H4O4 Mol. Weight:   104.010956 logP:   -1.3676
HBD:   2 HBA:   3
#Rotatable Bonds:   2 TPSA:   74.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 166 A 38.6 8.3 Ketone
Binding Affinity
-