PDB Entry (4guh) |
||
| ||
PDB ID: 4guh | Resolution: 1.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23341204 | DOI: 10.1002/pro.2218 | |
Protein |
|
Protein Name: 3-dehydroquinate dehydratase | |
Uniprot ID/ACC: P58687 (AROD_SALTY) | Organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) |
Gene Symbol: aroD | Gene ID: 1252876 |
Protein Class: LYASE |
Ligand |
||
Ligand Name: (4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid | ||
Canonical SMILES: O[C@@H]1CC(=CC(=O)[C@H]1O)C(O)=O | ||
Standard InChI: InChI=1S/C7H8O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,5-6,9-10H,2H2,(H,11,12)/t5-,6-/m1/s1 | ||
HET Code: 3DS | PubChem: 439774 | |
DrugBank: DB04347 | ChEMBL: CHEMBL1230114 | |
Molecular Formula: C7H8O5 | Mol. Weight: 172.03717 | logP: -1.308 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 1 | TPSA: 94.83 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 170 | A | 14.48 | 6.71 | Ketone |
Binding Affinity |
||
- |