PDB Entry (4qjg) |
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PDB ID: 4qjg | Resolution: 1.85 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Peptidoglycan glycosyltransferase | |
Uniprot ID/ACC: C8W8H7 (C8W8H7_ATOPD) | Organism: Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus) |
Gene Symbol: Apar_1344 | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: penicillin V | ||
Canonical SMILES: CC1(C)S[C@@H]2[C@H](NC(=O)COc3ccccc3)C(=O)N2[C@H]1C(O)=O | ||
Standard InChI: InChI=1S/C16H18N2O5S/c1-16(2)12(15(21)22)18-13(20)11(14(18)24-16)17-10(19)8-23-9-6-4-3-5-7-9/h3-7,11-12,14H,8H2,1-2H3,(H,17,19)(H,21,22)/t11-,12+,14-/m1/s1 | ||
HET Code: 35P | PubChem: 6869 | |
DrugBank: DB00417 | ChEMBL: CHEMBL615 | |
Molecular Formula: C16H18N2O5S | Mol. Weight: 350.09363 | logP: 0.6971 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 5 | TPSA: 95.94 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 682 | A | 14.91 | - | Beta-Lactam |
Binding Affinity |
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