PDB Entry (3d9c) |
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PDB ID: 3d9c | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 18781746 | DOI: 10.1021/ja804489m | |
Protein |
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Protein Name: Tyrosine-protein phosphatase non-receptor type 1 | |
Uniprot ID/ACC: P18031 (PTN1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PTPN1 | Gene ID: 5770 |
Protein Class: SIGNALING PROTEIN |
Ligand |
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Ligand Name: (4-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}phenyl)methaneseleninic acid | ||
Canonical SMILES: COC(=O)[C@H](Cc1ccc(C[Se](O)=O)cc1)NC(=O)OC(C)(C)C | ||
Standard InChI: InChI=1S/C16H23NO6Se/c1-16(2,3)23-15(19)17-13(14(18)22-4)9-11-5-7-12(8-6-11)10-24(20)21/h5-8,13H,9-10H2,1-4H3,(H,17,19)(H,20,21)/t13-/m0/s1 | ||
HET Code: ZYZ | PubChem: 25111933 | |
DrugBank: DB08783 | ChEMBL: CHEMBL1237006 | |
Molecular Formula: C16H23NO6Se | Mol. Weight: 405.06906 | logP: 1.2881 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 6 | TPSA: 101.93 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Double Bond | CYS 215 | A | 6.34 | 10.18 | Selenic Acid |
Binding Affinity |
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