PDB Entry (3d9c)
PDB ID: 3d9c Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18781746 DOI: 10.1021/ja804489m
Protein
Protein Name: Tyrosine-protein phosphatase non-receptor type 1
Uniprot ID/ACC: P18031 (PTN1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PTPN1 Gene ID: 5770
Protein Class: SIGNALING PROTEIN
Ligand
Ligand Name:   (4-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}phenyl)methaneseleninic acid
Canonical SMILES:   COC(=O)[C@H](Cc1ccc(C[Se](O)=O)cc1)NC(=O)OC(C)(C)C
Standard InChI:   InChI=1S/C16H23NO6Se/c1-16(2,3)23-15(19)17-13(14(18)22-4)9-11-5-7-12(8-6-11)10-24(20)21/h5-8,13H,9-10H2,1-4H3,(H,17,19)(H,20,21)/t13-/m0/s1
HET Code:   ZYZ PubChem:   25111933
DrugBank:   DB08783 ChEMBL:   CHEMBL1237006
Molecular Formula:   C16H23NO6Se Mol. Weight:   405.06906 logP:   1.2881
HBD:   2 HBA:   5
#Rotatable Bonds:   6 TPSA:   101.93
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 215 A 6.34 10.18 Selenic Acid
Binding Affinity
-