PDB Entry (2gkj) |
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PDB ID: 2gkj | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16723397 | DOI: 10.1073/pnas.0602537103 | |
Protein |
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Protein Name: Diaminopimelate epimerase | |
Uniprot ID/ACC: P44859 (DAPF_HAEIN) | Organism: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
Gene Symbol: dapF | Gene ID: - |
Protein Class: ISOMERASE |
Ligand |
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Ligand Name: DL-AZIDAP | ||
Canonical SMILES: N[C@@H](CCC[C@@]1(CN1)C(O)=O)C(O)=O | ||
Standard InChI: InChI=1S/C8H14N2O4/c9-5(6(11)12)2-1-3-8(4-10-8)7(13)14/h5,10H,1-4,9H2,(H,11,12)(H,13,14)/t5-,8+/m0/s1 | ||
HET Code: ZDR | PubChem: 11701228 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H14N2O4 | Mol. Weight: 202.09535 | logP: -1.0048 |
HBD: 4 | HBA: 4 | |
#Rotatable Bonds: 6 | TPSA: 122.56 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Aziridine Opening | CYS 217 | A | 11.2 | 15.38 | Aziridine |
Binding Affinity |
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