PDB Entry (2y2p) |
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PDB ID: 2y2p | Resolution: 1.62 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21732689 | DOI: 10.1021/CB2001846 | |
Protein |
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Protein Name: DD-transpeptidase | |
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) | Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6) |
Gene Symbol: pbp1b | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: [(1S)-1-({3-fluoro-[1,1'-biphenyl]-2-yl}formamido)ethyl]boronic acid | ||
Canonical SMILES: OB(O)[C@@H](C)NC(=O)c1c(F)cccc1-c2ccccc2 | ||
Standard InChI: InChI=1S/C15H15BFNO3/c1-10(16(20)21)18-15(19)14-12(8-5-9-13(14)17)11-6-3-2-4-7-11/h2-10,20-21H,1H3,(H,18,19)/t10-/m1/s1 | ||
HET Code: Z10 | PubChem: 53322947 | |
DrugBank: - | ChEMBL: CHEMBL1672822 | |
Molecular Formula: C15H15BFNO3 | Mol. Weight: 287.1129 | logP: 1.623 |
HBD: 3 | HBA: 3 | |
#Rotatable Bonds: 4 | TPSA: 69.56 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 460 | A | 12.8 | - | Boronic Acid |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 20000 nM |