PDB Entry (2y2p)
PDB ID: 2y2p Resolution: 1.62 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21732689 DOI: 10.1021/CB2001846
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Gene Symbol: pbp1b Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   [(1S)-1-({3-fluoro-[1,1'-biphenyl]-2-yl}formamido)ethyl]boronic acid
Canonical SMILES:   OB(O)[C@@H](C)NC(=O)c1c(F)cccc1-c2ccccc2
Standard InChI:   InChI=1S/C15H15BFNO3/c1-10(16(20)21)18-15(19)14-12(8-5-9-13(14)17)11-6-3-2-4-7-11/h2-10,20-21H,1H3,(H,18,19)/t10-/m1/s1
HET Code:   Z10 PubChem:   53322947
DrugBank:   - ChEMBL:   CHEMBL1672822
Molecular Formula:   C15H15BFNO3 Mol. Weight:   287.1129 logP:   1.623
HBD:   3 HBA:   3
#Rotatable Bonds:   4 TPSA:   69.56
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 460 A 12.8 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind IC50 : 20000 nM