PDB Entry (2y2q) |
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PDB ID: 2y2q | Resolution: 2.15 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21732689 | DOI: 10.1021/CB2001846 | |
Protein |
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Protein Name: DD-transpeptidase | |
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) | Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6) |
Gene Symbol: pbp1b | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 3-(dihydroxyboranyl)-5-acetamidobenzoic acid | ||
Canonical SMILES: CC(=O)Nc1cc(cc(c1)C(O)=O)B(O)O | ||
Standard InChI: InChI=1S/C9H10BNO5/c1-5(12)11-8-3-6(9(13)14)2-7(4-8)10(15)16/h2-4,15-16H,1H3,(H,11,12)(H,13,14) | ||
HET Code: Z06 | PubChem: 44119344 | |
DrugBank: - | ChEMBL: CHEMBL574842 | |
Molecular Formula: C9H10BNO5 | Mol. Weight: 223.0652 | logP: -0.977 |
HBD: 4 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 106.86 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 460 | A | 12.43 | - | Boronic Acid |
Binding Affinity |
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