PDB Entry (2y2q)
PDB ID: 2y2q Resolution: 2.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21732689 DOI: 10.1021/CB2001846
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Gene Symbol: pbp1b Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   3-(dihydroxyboranyl)-5-acetamidobenzoic acid
Canonical SMILES:   CC(=O)Nc1cc(cc(c1)C(O)=O)B(O)O
Standard InChI:   InChI=1S/C9H10BNO5/c1-5(12)11-8-3-6(9(13)14)2-7(4-8)10(15)16/h2-4,15-16H,1H3,(H,11,12)(H,13,14)
HET Code:   Z06 PubChem:   44119344
DrugBank:   - ChEMBL:   CHEMBL574842
Molecular Formula:   C9H10BNO5 Mol. Weight:   223.0652 logP:   -0.977
HBD:   4 HBA:   4
#Rotatable Bonds:   3 TPSA:   106.86
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 460 A 12.43 - Boronic Acid
Binding Affinity
-