PDB Entry (2bfg) |
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PDB ID: 2bfg | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16212978 | DOI: 10.1016/J.JMB.2005.09.003 | |
Protein |
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Protein Name: Beta-xylosidase | |
Uniprot ID/ACC: Q9ZFM2 (XYNB_GEOSE) | Organism: Geobacillus stearothermophilus (Bacillus stearothermophilus) |
Gene Symbol: xynB | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 2,5-dinitrophenyl-beta-d-xyloside | ||
Canonical SMILES: O[C@@H]1CO[C@H]([C@H](O)[C@H]1O)Oc2c([N+]([O-])=O)ccc([N+]([O-])=O)c2 | ||
Standard InChI: InChI=1S/C11H12N2O9/c14-7-4-21-11(10(16)9(7)15)22-8-3-5(12(17)18)1-2-6(8)13(19)20/h1-3,7,9-11,14-16H,4H2/t7-,9+,10-,11+/m1/s1 | ||
HET Code: XYS | PubChem: 101207195 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H12N2O9 | Mol. Weight: 316.0543 | logP: -0.6792 |
HBD: 3 | HBA: 9 | |
#Rotatable Bonds: 4 | TPSA: 165.43 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | GLU 278 | F | 12.99 | - | Hemiacetal |
Binding Affinity |
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