PDB Entry (5mtf)
PDB ID: 5mtf Resolution: 1.79 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29107700 DOI: 10.1016/j.chembiol.2017.09.007
Protein
Protein Name: Rhomboid protease GlpG
Uniprot ID/ACC: B7MDQ0 (GLPG_ECO45) Organism: Escherichia coli O45:K1 (strain S88 / ExPEC)
Gene Symbol: glpG Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ac-RVRHA-CONH-(2,4-dimethyl)benzyl
Canonical SMILES:   CC(C)[C@H](NC(=O)[C@H](CCCNC(N)=N)NC(C)=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](Cc1cnc[nH]1)C(=O)N[C@@H](C)C(=O)C(=O)NCc1cc(C)ccc1C
Standard InChI:   InChI=1S/C38H60N14O7/c1-20(2)30(52-33(56)27(49-24(6)53)9-7-13-44-37(39)40)35(58)50-28(10-8-14-45-38(41)42)32(55)51-29(16-26-18-43-19-47-26)34(57)48-23(5)31(54)36(59)46-17-25-15-21(3)11-12-22(25)4/h11-12,15,18-20,23,27-30H,7-10,13-14,16-17H2,1-6H3,(H,43,47)(H,46,59)(H,48,57)(H,49,53)(H,50,58)(H,51,55)(H,52,56)(H4,39,40,44)(H4,41,42,45)/t23-,27-,28-,29-,30-/m0/s1
HET Code:   W6Q PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C38H60N14O7 Mol. Weight:   824.4769 logP:   -1.89912
HBD:   13 HBA:   10
#Rotatable Bonds:   24 TPSA:   344.15
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 201 A 16.47 - Ketone
Binding Affinity
-