PDB Entry (5mtf) |
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PDB ID: 5mtf | Resolution: 1.79 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29107700 | DOI: 10.1016/j.chembiol.2017.09.007 | |
Protein |
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Protein Name: Rhomboid protease GlpG | |
Uniprot ID/ACC: B7MDQ0 (GLPG_ECO45) | Organism: Escherichia coli O45:K1 (strain S88 / ExPEC) |
Gene Symbol: glpG | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Ac-RVRHA-CONH-(2,4-dimethyl)benzyl | ||
Canonical SMILES: CC(C)[C@H](NC(=O)[C@H](CCCNC(N)=N)NC(C)=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](Cc1cnc[nH]1)C(=O)N[C@@H](C)C(=O)C(=O)NCc1cc(C)ccc1C | ||
Standard InChI: InChI=1S/C38H60N14O7/c1-20(2)30(52-33(56)27(49-24(6)53)9-7-13-44-37(39)40)35(58)50-28(10-8-14-45-38(41)42)32(55)51-29(16-26-18-43-19-47-26)34(57)48-23(5)31(54)36(59)46-17-25-15-21(3)11-12-22(25)4/h11-12,15,18-20,23,27-30H,7-10,13-14,16-17H2,1-6H3,(H,43,47)(H,46,59)(H,48,57)(H,49,53)(H,50,58)(H,51,55)(H,52,56)(H4,39,40,44)(H4,41,42,45)/t23-,27-,28-,29-,30-/m0/s1 | ||
HET Code: W6Q | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C38H60N14O7 | Mol. Weight: 824.4769 | logP: -1.89912 |
HBD: 13 | HBA: 10 | |
#Rotatable Bonds: 24 | TPSA: 344.15 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | SER 201 | A | 16.47 | - | Ketone |
Binding Affinity |
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