PDB Entry (4y70)
PDB ID: 4y70 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26020686 DOI: 10.1021/jacs.5b03688
Protein
Protein Name: Proteasome subunit beta type-2
Uniprot ID/ACC: P25043 (PSB2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: PUP1 Gene ID: 854328
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ac-LAV-ep
Canonical SMILES:   O=C(C)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](C(C)C)C(=O)[C@@]1(C)OC1
Standard InChI:   InChI=1S/C19H33N3O5/c1-10(2)8-14(21-13(6)23)18(26)20-12(5)17(25)22-15(11(3)4)16(24)19(7)9-27-19/h10-12,14-15H,8-9H2,1-7H3,(H,20,26)(H,21,23)(H,22,25)/t12-,14-,15-,19-/m0/s1
HET Code:   VOL PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C19H33N3O5 Mol. Weight:   383.24203 logP:   0.5407
HBD:   3 HBA:   5
#Rotatable Bonds:   10 TPSA:   116.9
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction THR 1 A 67.66 - Epoxide
Binding Affinity
-