PDB Entry (5dql)
PDB ID: 5dql Resolution: 1.78 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28679637 DOI: 10.1073/pnas.1706134114
Protein
Protein Name: Isocitrate lyase
Uniprot ID/ACC: P9WKK7 (ACEA_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: icl Gene ID: 45424429
Protein Class: LYASE
Ligand
Ligand Name:   2-vinyl glyoxylate
Canonical SMILES:   OC(=O)C(=O)C=C
Standard InChI:   InChI=1S/C4H4O3/c1-2-3(5)4(6)7/h2H,1H2,(H,6,7)
HET Code:   VGX PubChem:   162804
DrugBank:   - ChEMBL:   -
Molecular Formula:   C4H4O3 Mol. Weight:   100.016045 logP:   -0.1739
HBD:   1 HBA:   2
#Rotatable Bonds:   2 TPSA:   54.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 191 B 11.29 14.35 Vinyl Carbonyl
Binding Affinity
-