PDB Entry (5dql) |
||
| ||
PDB ID: 5dql | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28679637 | DOI: 10.1073/pnas.1706134114 | |
Protein |
|
Protein Name: Isocitrate lyase | |
Uniprot ID/ACC: P9WKK7 (ACEA_MYCTU) | Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Gene Symbol: icl | Gene ID: 45424429 |
Protein Class: LYASE |
Ligand |
||
Ligand Name: 2-vinyl glyoxylate | ||
Canonical SMILES: OC(=O)C(=O)C=C | ||
Standard InChI: InChI=1S/C4H4O3/c1-2-3(5)4(6)7/h2H,1H2,(H,6,7) | ||
HET Code: VGX | PubChem: 162804 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C4H4O3 | Mol. Weight: 100.016045 | logP: -0.1739 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 54.37 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 191 | B | 11.29 | 14.35 | Vinyl Carbonyl |
Binding Affinity |
||
- |