PDB Entry (6xr3) |
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PDB ID: 6xr3 | Resolution: 1.45 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: GRL-024-20 | ||
Canonical SMILES: COc1cccc(c12)[nH]c(c2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C(=O)c(s4)nc(c45)cccc5 | ||
Standard InChI: InChI=1S/C30H33N5O5S/c1-16(2)13-22(34-29(39)23-15-18-19(32-23)8-6-9-24(18)40-3)28(38)33-21(14-17-11-12-31-27(17)37)26(36)30-35-20-7-4-5-10-25(20)41-30/h4-10,15-17,21-22,32H,11-14H2,1-3H3,(H,31,37)(H,33,38)(H,34,39)/t17-,21-,22-/m0/s1 | ||
HET Code: V7G | PubChem: 72708377 | |
DrugBank: - | ChEMBL: CHEMBL2435614 | |
Molecular Formula: C30H33N5O5S | Mol. Weight: 575.2202 | logP: 3.8246 |
HBD: 4 | HBA: 7 | |
#Rotatable Bonds: 11 | TPSA: 142.28 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 145 | A | 28.43 | 15.15 | Ketone |
Binding Affinity |
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