PDB Entry (5tg2)
PDB ID: 5tg2 Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28038326 DOI: 10.1016/j.ejmech.2016.12.033
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   tert-butyl N-[(4S,7S,10S)-7-(cyclohexylmethyl)-10-formyl-5,8,13-trioxo-23-oxa-6,9,14,21,22-pentaazabicyclo[18.2.1]tricosa-1(22),20-dien-4-yl]carbamate
Canonical SMILES:   CC(C)(C)OC(=O)N[C@@H](CCc(oc12)nn2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@H](C=O)CCC(=O)NCCCCC1
Standard InChI:   InChI=1S/C30H48N6O7/c1-30(2,3)43-29(41)34-22-14-16-26-36-35-25(42-26)12-8-5-9-17-31-24(38)15-13-21(19-37)32-28(40)23(33-27(22)39)18-20-10-6-4-7-11-20/h19-23H,4-18H2,1-3H3,(H,31,38)(H,32,40)(H,33,39)(H,34,41)/t21-,22-,23-/m0/s1
HET Code:   V69 PubChem:   127033376
DrugBank:   - ChEMBL:   CHEMBL3786543
Molecular Formula:   C30H48N6O7 Mol. Weight:   604.35846 logP:   2.6572
HBD:   4 HBA:   9
#Rotatable Bonds:   4 TPSA:   181.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 22.36 13.25 Aldehyde
Binding Affinity
Database Name Value
PDBBind IC50 : 3200 nM