PDB Entry (5wej) |
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PDB ID: 5wej | Resolution: 1.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29227928 | DOI: 10.1016/j.ejmech.2017.12.014 | |
Protein |
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Protein Name: Genome polyprotein | |
Uniprot ID/ACC: Q83883 (POLG_NVN68) | Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US) |
Gene Symbol: ORF1 | Gene ID: 1491970 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (2S)-2-[5-(3-chlorobenzyl)-2-oxooxazolidin-3-yl]-4-methyl-N-[(S)-1-oxo-3-{(S)-2-oxopyrrolidin-3-yl} propan-2-yl] pentanamide | ||
Canonical SMILES: Clc1cc(ccc1)C[C@H]2OC(=O)N(C2)[C@@H](CC(C)C)C(=O)N[C@H](C=O)C[C@@H]3CCNC3=O | ||
Standard InChI: InChI=1S/C23H30ClN3O5/c1-14(2)8-20(22(30)26-18(13-28)11-16-6-7-25-21(16)29)27-12-19(32-23(27)31)10-15-4-3-5-17(24)9-15/h3-5,9,13-14,16,18-20H,6-8,10-12H2,1-2H3,(H,25,29)(H,26,30)/t16-,18-,19+,20-/m0/s1 | ||
HET Code: V45 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C23H30ClN3O5 | Mol. Weight: 463.1874 | logP: 2.3279 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 10 | TPSA: 104.81 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 139 | A | 18.18 | 15.16 | Aldehyde |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 15300 nM |