PDB Entry (5wej)
PDB ID: 5wej Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29227928 DOI: 10.1016/j.ejmech.2017.12.014
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S)-2-[5-(3-chlorobenzyl)-2-oxooxazolidin-3-yl]-4-methyl-N-[(S)-1-oxo-3-{(S)-2-oxopyrrolidin-3-yl} propan-2-yl] pentanamide
Canonical SMILES:   Clc1cc(ccc1)C[C@H]2OC(=O)N(C2)[C@@H](CC(C)C)C(=O)N[C@H](C=O)C[C@@H]3CCNC3=O
Standard InChI:   InChI=1S/C23H30ClN3O5/c1-14(2)8-20(22(30)26-18(13-28)11-16-6-7-25-21(16)29)27-12-19(32-23(27)31)10-15-4-3-5-17(24)9-15/h3-5,9,13-14,16,18-20H,6-8,10-12H2,1-2H3,(H,25,29)(H,26,30)/t16-,18-,19+,20-/m0/s1
HET Code:   V45 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C23H30ClN3O5 Mol. Weight:   463.1874 logP:   2.3279
HBD:   2 HBA:   5
#Rotatable Bonds:   10 TPSA:   104.81
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 18.18 15.16 Aldehyde
Binding Affinity
Database Name Value
PDBBind IC50 : 15300 nM