PDB Entry (5rhb) |
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PDB ID: 5rhb | Resolution: 1.43 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Cov_HetLib030 | ||
Canonical SMILES: N#Cc1ncccn1 | ||
Standard InChI: InChI=1S/C5H3N3/c6-4-5-7-2-1-3-8-5/h1-3H | ||
HET Code: USD | PubChem: 2757979 | |
DrugBank: - | ChEMBL: CHEMBL3352946 | |
Molecular Formula: C5H3N3 | Mol. Weight: 105.0327 | logP: 0.34828 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 0 | TPSA: 49.57 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 145 | A | 23.52 | 13.36 | Nitrile |
Binding Affinity |
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