PDB Entry (5rhf) |
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PDB ID: 5rhf | Resolution: 1.76 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PG-COV-34 | ||
Canonical SMILES: c1ccccc1N(C)C(=O)C2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C15H19ClN2O2/c1-17(13-5-3-2-4-6-13)15(20)12-7-9-18(10-8-12)14(19)11-16/h2-6,12H,7-11H2,1H3 | ||
HET Code: UPJ | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H19ClN2O2 | Mol. Weight: 294.1135 | logP: 2.1268 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 40.62 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 25.07 | 13.72 | Halomethyl Carbonyl |
Binding Affinity |
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