PDB Entry (5rhf)
PDB ID: 5rhf Resolution: 1.76 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PG-COV-34
Canonical SMILES:   c1ccccc1N(C)C(=O)C2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C15H19ClN2O2/c1-17(13-5-3-2-4-6-13)15(20)12-7-9-18(10-8-12)14(19)11-16/h2-6,12H,7-11H2,1H3
HET Code:   UPJ PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H19ClN2O2 Mol. Weight:   294.1135 logP:   2.1268
HBD:   0 HBA:   2
#Rotatable Bonds:   3 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 25.07 13.72 Halomethyl Carbonyl
Binding Affinity
-