PDB Entry (5rhe) |
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PDB ID: 5rhe | Resolution: 1.56 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PG-COV-42 | ||
Canonical SMILES: COc1ccc(cn1)NC(=O)C2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C14H18ClN3O3/c1-21-12-3-2-11(9-16-12)17-14(20)10-4-6-18(7-5-10)13(19)8-15/h2-3,9-10H,4-8H2,1H3,(H,17,20) | ||
HET Code: UPD | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H18ClN3O3 | Mol. Weight: 311.10367 | logP: 1.5061 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 71.53 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.35 | 14.03 | Halomethyl Carbonyl |
Binding Affinity |
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