PDB Entry (4nj4)
PDB ID: 4nj4 Resolution: 2.02 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24489119 DOI: 10.1093/nar/gku085
Protein
Protein Name: RNA demethylase ALKBH5
Uniprot ID/ACC: Q6P6C2 (ALKB5_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: ALKBH5 Gene ID: 54890
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   IOX3
Canonical SMILES:   OC(=O)CNC(=O)c1nc(Cl)c2ccccc2c1O
Standard InChI:   InChI=1S/C12H9ClN2O4/c13-11-7-4-2-1-3-6(7)10(18)9(15-11)12(19)14-5-8(16)17/h1-4,18H,5H2,(H,14,19)(H,16,17)
HET Code:   UN9 PubChem:   6914666
DrugBank:   DB08687 ChEMBL:   CHEMBL426560
Molecular Formula:   C12H9ClN2O4 Mol. Weight:   280.0251 logP:   1.4082
HBD:   3 HBA:   4
#Rotatable Bonds:   3 TPSA:   99.52
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aromatic Substitution CYS 200 A 66.09 14.8 Aryl Halide
Binding Affinity
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