PDB Entry (5du9) |
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PDB ID: 5du9 | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26991102 | DOI: 10.1016/j.chembiol.2016.02.012 | |
Protein |
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Protein Name: CDA peptide synthetase I | |
Uniprot ID/ACC: Q9Z4X6 (Q9Z4X6_STRCO) | Organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) |
Gene Symbol: SCO3230 | Gene ID: 1098664 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (2S)-2-amino-N-(4-bromobutyl)propanamide | ||
Canonical SMILES: C[C@H](N)C(=O)NCCCCBr | ||
Standard InChI: InChI=1S/C7H15BrN2O/c1-6(9)7(11)10-5-3-2-4-8/h6H,2-5,9H2,1H3,(H,10,11)/t6-/m0/s1 | ||
HET Code: UM2 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C7H15BrN2O | Mol. Weight: 222.03677 | logP: 0.6249 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 5 | TPSA: 55.12 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 17 | B | 45.81 | 12.74 | Alkyl Halide |
Binding Affinity |
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