PDB Entry (5du9)
PDB ID: 5du9 Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26991102 DOI: 10.1016/j.chembiol.2016.02.012
Protein
Protein Name: CDA peptide synthetase I
Uniprot ID/ACC: Q9Z4X6 (Q9Z4X6_STRCO) Organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Gene Symbol: SCO3230 Gene ID: 1098664
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S)-2-amino-N-(4-bromobutyl)propanamide
Canonical SMILES:   C[C@H](N)C(=O)NCCCCBr
Standard InChI:   InChI=1S/C7H15BrN2O/c1-6(9)7(11)10-5-3-2-4-8/h6H,2-5,9H2,1H3,(H,10,11)/t6-/m0/s1
HET Code:   UM2 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H15BrN2O Mol. Weight:   222.03677 logP:   0.6249
HBD:   2 HBA:   2
#Rotatable Bonds:   5 TPSA:   55.12
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 17 B 45.81 12.74 Alkyl Halide
Binding Affinity
-