PDB Entry (5rh6) |
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PDB ID: 5rh6 | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Z4439011588 | ||
Canonical SMILES: CCc1cccc(C)c1NC(=O)[C@@H](c2cccnc2)N(C(=O)C=C)c3ccc(nc3)C(C)C | ||
Standard InChI: InChI=1S/C27H30N4O2/c1-6-20-11-8-10-19(5)25(20)30-27(33)26(21-12-9-15-28-16-21)31(24(32)7-2)22-13-14-23(18(3)4)29-17-22/h7-18,26H,2,6H2,1,3-5H3,(H,30,33)/t26-/m1/s1 | ||
HET Code: UHY | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C27H30N4O2 | Mol. Weight: 442.23688 | logP: 5.36982 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 8 | TPSA: 75.19 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 145 | A | 23.55 | 13.86 | Vinyl Carbonyl |
Binding Affinity |
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