PDB Entry (3ewu)
PDB ID: 3ewu Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19472232 DOI: 10.1002/chem.200900397
Protein
Protein Name: Uridine 5'-monophosphate synthase
Uniprot ID/ACC: P11172 (UMPS_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: UMPS Gene ID: 7372
Protein Class: LYASE
Ligand
Ligand Name:   6-acetyl-UMP
Canonical SMILES:   CC(=O)c1cc(=O)[nH]c(=O)n1[C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O
Standard InChI:   InChI=1S/C11H15N2O10P/c1-4(14)5-2-7(15)12-11(18)13(5)10-9(17)8(16)6(23-10)3-22-24(19,20)21/h2,6,8-10,16-17H,3H2,1H3,(H,12,15,18)(H2,19,20,21)/p-2/t6-,8-,9-,10-/m1/s1
HET Code:   UEP PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H13N2O10P-2 Mol. Weight:   364.0319 logP:   -3.7963
HBD:   3 HBA:   11
#Rotatable Bonds:   5 TPSA:   194.04
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 314 A 26.32 5.65 Ketone
Binding Affinity
Database Name Value
PDBBind IC50 : 24000 nM