PDB Entry (6xqu) |
||
| ||
PDB ID: 6xqu | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33152262 | DOI: 10.1016/j.str.2020.10.007 | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: boceprevir | ||
Canonical SMILES: CC(C)(C)NC(=O)N[C@@H](C(C)(C)C)C(=O)N(C[C@@H]([C@@H]12)C2(C)C)[C@@H]1C(=O)N[C@@H](C(=O)C(=O)N)CC3CCC3 | ||
Standard InChI: InChI=1S/C27H45N5O5/c1-25(2,3)20(30-24(37)31-26(4,5)6)23(36)32-13-15-17(27(15,7)8)18(32)22(35)29-16(19(33)21(28)34)12-14-10-9-11-14/h14-18,20H,9-13H2,1-8H3,(H2,28,34)(H,29,35)(H2,30,31,37)/t15-,16+,17-,18-,20+/m0/s1 | ||
HET Code: U5G | PubChem: 15604474 | |
DrugBank: - | ChEMBL: CHEMBL3542272 | |
Molecular Formula: C27H45N5O5 | Mol. Weight: 519.34204 | logP: 1.7112 |
HBD: 4 | HBA: 5 | |
#Rotatable Bonds: 8 | TPSA: 150.7 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 145 | A | 24.3 | 14.92 | Ketone |
Binding Affinity |
||
- |