PDB Entry (1o41) |
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PDB ID: 1o41 | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14613321 | DOI: 10.1021/jm020970s | |
Protein |
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Protein Name: Proto-oncogene tyrosine-protein kinase Src | |
Uniprot ID/ACC: P12931 (SRC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: SRC | Gene ID: 6714 |
Protein Class: SIGNALING PROTEIN |
Ligand |
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Ligand Name: RU78300 | ||
Canonical SMILES: COc1cccc(C=O)c1OP(O)(O)=O | ||
Standard InChI: InChI=1S/C8H9O6P/c1-13-7-4-2-3-6(5-9)8(7)14-15(10,11)12/h2-5H,1H3,(H2,10,11,12) | ||
HET Code: 300 | PubChem: 5287488 | |
DrugBank: DB03306 | ChEMBL: CHEMBL25186 | |
Molecular Formula: C8H9O6P | Mol. Weight: 232.01367 | logP: 0.9792 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 93.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 44 | A | 11.77 | 12.67 | Aldehyde |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 900000 nM |
BindingDB | IC50 : 95000-900000 nM , IC50 : 900000 nM , IC50 : 95000 nM |