PDB Entry (5rgp) |
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PDB ID: 5rgp | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102628 | ||
Canonical SMILES: Cc1ccc(c(C)c1)S(=O)(=O)N2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C14H19ClN2O3S/c1-11-3-4-13(12(2)9-11)21(19,20)17-7-5-16(6-8-17)14(18)10-15/h3-4,9H,5-8,10H2,1-2H3 | ||
HET Code: U1M | PubChem: 4299411 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H19ClN2O3S | Mol. Weight: 330.0805 | logP: 1.37514 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 57.69 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.12 | 13.65 | Halomethyl Carbonyl |
Binding Affinity |
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