PDB Entry (5rgo) |
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PDB ID: 5rgo | Resolution: 1.74 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102248 | ||
Canonical SMILES: ClCC(=O)N1CCN(CC1)C(=O)c2ccco2 | ||
Standard InChI: InChI=1S/C11H13ClN2O3/c12-8-10(15)13-3-5-14(6-4-13)11(16)9-2-1-7-17-9/h1-2,7H,3-6,8H2 | ||
HET Code: U1G | PubChem: 2404787 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H13ClN2O3 | Mol. Weight: 256.06146 | logP: 0.8028 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 53.76 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 17.57 | 13.24 | Halomethyl Carbonyl |
Binding Affinity |
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