PDB Entry (5rgm)
PDB ID: 5rgm Resolution: 2.04 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102142
Canonical SMILES:   ClCC(=O)NNC(=O)c(s1)cc(c12)CCCC2
Standard InChI:   InChI=1S/C11H13ClN2O2S/c12-6-10(15)13-14-11(16)9-5-7-3-1-2-4-8(7)17-9/h5H,1-4,6H2,(H,13,15)(H,14,16)
HET Code:   U1D PubChem:   4961670
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H13ClN2O2S Mol. Weight:   272.03864 logP:   1.6267
HBD:   2 HBA:   3
#Rotatable Bonds:   2 TPSA:   58.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 21.77 13.98 Halomethyl Carbonyl
Binding Affinity
-