PDB Entry (5rgm) |
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PDB ID: 5rgm | Resolution: 2.04 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102142 | ||
Canonical SMILES: ClCC(=O)NNC(=O)c(s1)cc(c12)CCCC2 | ||
Standard InChI: InChI=1S/C11H13ClN2O2S/c12-6-10(15)13-14-11(16)9-5-7-3-1-2-4-8(7)17-9/h5H,1-4,6H2,(H,13,15)(H,14,16) | ||
HET Code: U1D | PubChem: 4961670 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H13ClN2O2S | Mol. Weight: 272.03864 | logP: 1.6267 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 58.2 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 21.77 | 13.98 | Halomethyl Carbonyl |
Binding Affinity |
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