PDB Entry (5rgl)
PDB ID: 5rgl Resolution: 1.76 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102962
Canonical SMILES:   Cc1ccc(cc1)C(=O)N2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C14H17ClN2O2/c1-11-2-4-12(5-3-11)14(19)17-8-6-16(7-9-17)13(18)10-15/h2-5H,6-10H2,1H3
HET Code:   U0Y PubChem:   2050220
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H17ClN2O2 Mol. Weight:   280.09787 logP:   1.51822
HBD:   0 HBA:   2
#Rotatable Bonds:   2 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 16.92 13.74 Halomethyl Carbonyl
Binding Affinity
-