PDB Entry (1dy9)
PDB ID: 1dy9 Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10702283 DOI: 10.1074/JBC.275.10.7152
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: P26662 (POLG_HCVJA) Organism: Hepatitis C virus genotype 1b (isolate Japanese) (HCV)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-(tert-butoxycarbonyl)-L-alpha-glutamyl-N-[(1R)-1-(carboxycarbonyl)-3,3-difluoropropyl]-L-leucinamide
Canonical SMILES:   CC(C)C[C@H](NC(=O)[C@H](CCC(O)=O)NC(=O)OC(C)(C)C)C(=O)N[C@@H](CC(F)F)C(=O)C(O)=O
Standard InChI:   InChI=1S/C21H33F2N3O9/c1-10(2)8-13(18(31)24-12(9-14(22)23)16(29)19(32)33)25-17(30)11(6-7-15(27)28)26-20(34)35-21(3,4)5/h10-14H,6-9H2,1-5H3,(H,24,31)(H,25,30)(H,26,34)(H,27,28)(H,32,33)/t11-,12-,13-/m0/s1
HET Code:   2ZF PubChem:   487918
DrugBank:   - ChEMBL:   CHEMBL163917
Molecular Formula:   C21H33F2N3O9 Mol. Weight:   509.21848 logP:   1.0691
HBD:   5 HBA:   7
#Rotatable Bonds:   14 TPSA:   188.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 139 A 21.49 - Ketone
Binding Affinity
Database Name Value
BindingDB IC50 : 330 nM