PDB Entry (6vnu)
PDB ID: 6vnu Resolution: 1.47 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32182393 DOI: 10.1002/cbic.202000054
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: Q9L5C7 (Q9L5C7_ECOLX) Organism: Escherichia coli
Gene Symbol: blaCTXM14 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ruthenocenyl-7-Aminocephalosporanic Acid
Canonical SMILES:   [Ru]123456789[C]%10[C]1[C]2[C]3[C]4%10.CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CCC(=O)C51[C]6[C]7[C]8[C]91)C2=O)C(O)=O
Standard InChI:   InChI=1S/C19H15N2O7S.C5.Ru/c1-10(22)28-8-12-9-29-18-15(17(25)21(18)16(12)19(26)27)20-14(24)7-6-13(23)11-4-2-3-5-11;1-2-4-5-3-1;/h15,18H,6-9H2,1H3,(H,20,24)(H,26,27);;/t15-,18-;;/m1../s1
HET Code:   TDJ PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C24H15N2O7RuS Mol. Weight:   576.96436 logP:   0.08811
HBD:   2 HBA:   7
#Rotatable Bonds:   8 TPSA:   130.08
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 70 B 9.15 - Beta-Lactam
Binding Affinity
-