PDB Entry (6vnu) |
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PDB ID: 6vnu | Resolution: 1.47 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32182393 | DOI: 10.1002/cbic.202000054 | |
Protein |
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Protein Name: Beta-lactamase | |
Uniprot ID/ACC: Q9L5C7 (Q9L5C7_ECOLX) | Organism: Escherichia coli |
Gene Symbol: blaCTXM14 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Ruthenocenyl-7-Aminocephalosporanic Acid | ||
Canonical SMILES: [Ru]123456789[C]%10[C]1[C]2[C]3[C]4%10.CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CCC(=O)C51[C]6[C]7[C]8[C]91)C2=O)C(O)=O | ||
Standard InChI: InChI=1S/C19H15N2O7S.C5.Ru/c1-10(22)28-8-12-9-29-18-15(17(25)21(18)16(12)19(26)27)20-14(24)7-6-13(23)11-4-2-3-5-11;1-2-4-5-3-1;/h15,18H,6-9H2,1H3,(H,20,24)(H,26,27);;/t15-,18-;;/m1../s1 | ||
HET Code: TDJ | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C24H15N2O7RuS | Mol. Weight: 576.96436 | logP: 0.08811 |
HBD: 2 | HBA: 7 | |
#Rotatable Bonds: 8 | TPSA: 130.08 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 70 | B | 9.15 | - | Beta-Lactam |
Binding Affinity |
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