PDB Entry (5rg3)
PDB ID: 5rg3 Resolution: 1.58 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   NCL-00025412
Canonical SMILES:   ClCC(=O)N[C@@H](CC(=O)N)C(=O)NCC=C
Standard InChI:   InChI=1S/C9H14ClN3O3/c1-2-3-12-9(16)6(4-7(11)14)13-8(15)5-10/h2,6H,1,3-5H2,(H2,11,14)(H,12,16)(H,13,15)/t6-/m0/s1
HET Code:   T9P PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C9H14ClN3O3 Mol. Weight:   247.07237 logP:   -1.1124
HBD:   3 HBA:   3
#Rotatable Bonds:   7 TPSA:   101.29
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 28.88 13.16 Halomethyl Carbonyl
Binding Affinity
-