PDB Entry (5rg3) |
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PDB ID: 5rg3 | Resolution: 1.58 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: NCL-00025412 | ||
Canonical SMILES: ClCC(=O)N[C@@H](CC(=O)N)C(=O)NCC=C | ||
Standard InChI: InChI=1S/C9H14ClN3O3/c1-2-3-12-9(16)6(4-7(11)14)13-8(15)5-10/h2,6H,1,3-5H2,(H2,11,14)(H,12,16)(H,13,15)/t6-/m0/s1 | ||
HET Code: T9P | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H14ClN3O3 | Mol. Weight: 247.07237 | logP: -1.1124 |
HBD: 3 | HBA: 3 | |
#Rotatable Bonds: 7 | TPSA: 101.29 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 28.88 | 13.16 | Halomethyl Carbonyl |
Binding Affinity |
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