PDB Entry (5rg2) |
||
| ||
PDB ID: 5rg2 | Resolution: 1.63 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: NCL-00025058 | ||
Canonical SMILES: ClCC(=O)N[C@H]([C@@H](C)O)C(=O)NCC=C | ||
Standard InChI: InChI=1S/C9H15ClN2O3/c1-3-4-11-9(15)8(6(2)13)12-7(14)5-10/h3,6,8,13H,1,4-5H2,2H3,(H,11,15)(H,12,14)/t6-,8-/m1/s1 | ||
HET Code: T9M | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H15ClN2O3 | Mol. Weight: 234.07712 | logP: -0.607 |
HBD: 3 | HBA: 3 | |
#Rotatable Bonds: 6 | TPSA: 78.43 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 27.25 | 13.04 | Halomethyl Carbonyl |
Binding Affinity |
||
- |