PDB Entry (5rg0)
PDB ID: 5rg0 Resolution: 1.72 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102535
Canonical SMILES:   CC(=O)N1CCN(CC1)C(=O)CCl
Standard InChI:   InChI=1S/C8H13ClN2O2/c1-7(12)10-2-4-11(5-3-10)8(13)6-9/h2-6H2,1H3
HET Code:   T8Y PubChem:   2050526
DrugBank:   - ChEMBL:   -
Molecular Formula:   C8H13ClN2O2 Mol. Weight:   204.06656 logP:   -0.0841
HBD:   0 HBA:   2
#Rotatable Bonds:   1 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.32 13.84 Halomethyl Carbonyl
Binding Affinity
-