PDB Entry (5rg0) |
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PDB ID: 5rg0 | Resolution: 1.72 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102535 | ||
Canonical SMILES: CC(=O)N1CCN(CC1)C(=O)CCl | ||
Standard InChI: InChI=1S/C8H13ClN2O2/c1-7(12)10-2-4-11(5-3-10)8(13)6-9/h2-6H2,1H3 | ||
HET Code: T8Y | PubChem: 2050526 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H13ClN2O2 | Mol. Weight: 204.06656 | logP: -0.0841 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 1 | TPSA: 40.62 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.32 | 13.84 | Halomethyl Carbonyl |
Binding Affinity |
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